The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.
Identifieur interne : 000003 ( France/Analysis ); précédent : 000002; suivant : 000004The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.
Auteurs : M. Ayadi [Tunisie] ; M. Hanana [Tunisie] ; N. Kharrat [Tunisie] ; H. Merchaoui [Tunisie] ; R Ben Marzoug [Tunisie] ; V. Lauvergeat [France] ; A. Rebaï [Tunisie] ; R. Mzid [Tunisie]Source :
- Applied biochemistry and biotechnology [ 1559-0291 ] ; 2016.
Abstract
WRKY transcription factors belong to a large family of plant transcriptional regulators whose members have been reported to be involved in a wide range of biological roles including plant development, adaptation to environmental constraints and response to several diseases. However, little or poor information is available about WRKY's in Citrus. The recent release of completely assembled genomes sequences of Citrus sinensis and Citrus clementina and the availability of ESTs sequences from other citrus species allowed us to perform a genome survey for Citrus WRKY proteins. In the present study, we identified 100 WRKY members from C. sinensis (51), C. clementina (48) and Citrus unshiu (1), and analyzed their chromosomal distribution, gene structure, gene duplication, syntenic relation and phylogenetic analysis. A phylogenetic tree of 100 Citrus WRKY sequences with their orthologs from Arabidopsis has distinguished seven groups. The CsWRKY genes were distributed across all ten sweet orange chromosomes. A comprehensive approach and an integrative analysis of Citrus WRKY gene expression revealed variable profiles of expression within tissues and stress conditions indicating functional diversification. Thus, candidate Citrus WRKY genes have been proposed as potentially involved in fruit acidification, essential oil biosynthesis and abiotic/biotic stress tolerance. Our results provided essential prerequisites for further WRKY genes cloning and functional analysis with an aim of citrus crop improvement.
DOI: 10.1007/s12010-016-2114-8
PubMed: 27193354
Affiliations:
Links toward previous steps (curation, corpus...)
- to stream PubMed, to step Corpus: 000008
- to stream PubMed, to step Curation: 000008
- to stream PubMed, to step Checkpoint: 000008
- to stream Ncbi, to step Merge: 002032
- to stream Ncbi, to step Curation: 002032
- to stream Ncbi, to step Checkpoint: 002032
- to stream Main, to step Merge: 000031
- to stream Main, to step Curation: 000031
- to stream Main, to step Exploration: 000031
- to stream France, to step Extraction: 000003
Links to Exploration step
pubmed:27193354Le document en format XML
<record><TEI><teiHeader><fileDesc><titleStmt><title xml:lang="en">The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.</title><author><name sortKey="Ayadi, M" sort="Ayadi, M" uniqKey="Ayadi M" first="M" last="Ayadi">M. Ayadi</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia. mariem.ayedi@gmail.com.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Hanana, M" sort="Hanana, M" uniqKey="Hanana M" first="M" last="Hanana">M. Hanana</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Kharrat, N" sort="Kharrat, N" uniqKey="Kharrat N" first="N" last="Kharrat">N. Kharrat</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Merchaoui, H" sort="Merchaoui, H" uniqKey="Merchaoui H" first="H" last="Merchaoui">H. Merchaoui</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Marzoug, R Ben" sort="Marzoug, R Ben" uniqKey="Marzoug R" first="R Ben" last="Marzoug">R Ben Marzoug</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Lauvergeat, V" sort="Lauvergeat, V" uniqKey="Lauvergeat V" first="V" last="Lauvergeat">V. Lauvergeat</name><affiliation wicri:level="3"><nlm:affiliation>Unit 'Ecophysiology and Grape Functional Genomics' Institute of Vine and Wine Sciences, INRA Bordeaux-Aquitaine, 210 Chemin de Leysotte - CS 50008, 33882, Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Unit 'Ecophysiology and Grape Functional Genomics' Institute of Vine and Wine Sciences, INRA Bordeaux-Aquitaine, 210 Chemin de Leysotte - CS 50008, 33882, Villenave d'Ornon Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region><settlement type="city">Villenave d'Ornon</settlement></placeName></affiliation></author><author><name sortKey="Rebai, A" sort="Rebai, A" uniqKey="Rebai A" first="A" last="Rebaï">A. Rebaï</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Mzid, R" sort="Mzid, R" uniqKey="Mzid R" first="R" last="Mzid">R. Mzid</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author></titleStmt><publicationStmt><idno type="wicri:source">PubMed</idno><date when="2016">2016</date><idno type="RBID">pubmed:27193354</idno><idno type="pmid">27193354</idno><idno type="doi">10.1007/s12010-016-2114-8</idno><idno type="wicri:Area/PubMed/Corpus">000008</idno><idno type="wicri:Area/PubMed/Curation">000008</idno><idno type="wicri:Area/PubMed/Checkpoint">000008</idno><idno type="wicri:Area/Ncbi/Merge">002032</idno><idno type="wicri:Area/Ncbi/Curation">002032</idno><idno type="wicri:Area/Ncbi/Checkpoint">002032</idno><idno type="wicri:Area/Main/Merge">000031</idno><idno type="wicri:Area/Main/Curation">000031</idno><idno type="wicri:Area/Main/Exploration">000031</idno><idno type="wicri:Area/France/Extraction">000003</idno></publicationStmt><sourceDesc><biblStruct><analytic><title xml:lang="en">The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.</title><author><name sortKey="Ayadi, M" sort="Ayadi, M" uniqKey="Ayadi M" first="M" last="Ayadi">M. Ayadi</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia. mariem.ayedi@gmail.com.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Hanana, M" sort="Hanana, M" uniqKey="Hanana M" first="M" last="Hanana">M. Hanana</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Kharrat, N" sort="Kharrat, N" uniqKey="Kharrat N" first="N" last="Kharrat">N. Kharrat</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Merchaoui, H" sort="Merchaoui, H" uniqKey="Merchaoui H" first="H" last="Merchaoui">H. Merchaoui</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author><author><name sortKey="Marzoug, R Ben" sort="Marzoug, R Ben" uniqKey="Marzoug R" first="R Ben" last="Marzoug">R Ben Marzoug</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Lauvergeat, V" sort="Lauvergeat, V" uniqKey="Lauvergeat V" first="V" last="Lauvergeat">V. Lauvergeat</name><affiliation wicri:level="3"><nlm:affiliation>Unit 'Ecophysiology and Grape Functional Genomics' Institute of Vine and Wine Sciences, INRA Bordeaux-Aquitaine, 210 Chemin de Leysotte - CS 50008, 33882, Villenave d'Ornon Cedex, France.</nlm:affiliation><country xml:lang="fr">France</country><wicri:regionArea>Unit 'Ecophysiology and Grape Functional Genomics' Institute of Vine and Wine Sciences, INRA Bordeaux-Aquitaine, 210 Chemin de Leysotte - CS 50008, 33882, Villenave d'Ornon Cedex</wicri:regionArea><placeName><region type="region" nuts="2">Nouvelle-Aquitaine</region><region type="old region" nuts="2">Aquitaine</region><settlement type="city">Villenave d'Ornon</settlement></placeName></affiliation></author><author><name sortKey="Rebai, A" sort="Rebai, A" uniqKey="Rebai A" first="A" last="Rebaï">A. Rebaï</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Molecular and Cellular Screening Processes, Center of Biotechnology of Sfax, University of Sfax, Sidi Mansour Road, P.O. Box 1177, 3018, Sfax</wicri:regionArea><wicri:noRegion>Sfax</wicri:noRegion></affiliation></author><author><name sortKey="Mzid, R" sort="Mzid, R" uniqKey="Mzid R" first="R" last="Mzid">R. Mzid</name><affiliation wicri:level="1"><nlm:affiliation>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050, Tunisia.</nlm:affiliation><country xml:lang="fr">Tunisie</country><wicri:regionArea>Laboratory of Extremophile Plants. Center of Biotechnology of Borj-Cédria (CBBC), BP 901, Hammam-lif, 2050</wicri:regionArea><wicri:noRegion>2050</wicri:noRegion></affiliation></author></analytic><series><title level="j">Applied biochemistry and biotechnology</title><idno type="eISSN">1559-0291</idno><imprint><date when="2016" type="published">2016</date></imprint></series></biblStruct></sourceDesc></fileDesc><profileDesc><textClass></textClass></profileDesc></teiHeader><front><div type="abstract" xml:lang="en">WRKY transcription factors belong to a large family of plant transcriptional regulators whose members have been reported to be involved in a wide range of biological roles including plant development, adaptation to environmental constraints and response to several diseases. However, little or poor information is available about WRKY's in Citrus. The recent release of completely assembled genomes sequences of Citrus sinensis and Citrus clementina and the availability of ESTs sequences from other citrus species allowed us to perform a genome survey for Citrus WRKY proteins. In the present study, we identified 100 WRKY members from C. sinensis (51), C. clementina (48) and Citrus unshiu (1), and analyzed their chromosomal distribution, gene structure, gene duplication, syntenic relation and phylogenetic analysis. A phylogenetic tree of 100 Citrus WRKY sequences with their orthologs from Arabidopsis has distinguished seven groups. The CsWRKY genes were distributed across all ten sweet orange chromosomes. A comprehensive approach and an integrative analysis of Citrus WRKY gene expression revealed variable profiles of expression within tissues and stress conditions indicating functional diversification. Thus, candidate Citrus WRKY genes have been proposed as potentially involved in fruit acidification, essential oil biosynthesis and abiotic/biotic stress tolerance. Our results provided essential prerequisites for further WRKY genes cloning and functional analysis with an aim of citrus crop improvement.</div></front></TEI><affiliations><list><country><li>France</li><li>Tunisie</li></country><region><li>Aquitaine</li><li>Nouvelle-Aquitaine</li></region><settlement><li>Villenave d'Ornon</li></settlement></list><tree><country name="Tunisie"><noRegion><name sortKey="Ayadi, M" sort="Ayadi, M" uniqKey="Ayadi M" first="M" last="Ayadi">M. Ayadi</name></noRegion><name sortKey="Hanana, M" sort="Hanana, M" uniqKey="Hanana M" first="M" last="Hanana">M. Hanana</name><name sortKey="Kharrat, N" sort="Kharrat, N" uniqKey="Kharrat N" first="N" last="Kharrat">N. Kharrat</name><name sortKey="Marzoug, R Ben" sort="Marzoug, R Ben" uniqKey="Marzoug R" first="R Ben" last="Marzoug">R Ben Marzoug</name><name sortKey="Merchaoui, H" sort="Merchaoui, H" uniqKey="Merchaoui H" first="H" last="Merchaoui">H. Merchaoui</name><name sortKey="Mzid, R" sort="Mzid, R" uniqKey="Mzid R" first="R" last="Mzid">R. Mzid</name><name sortKey="Rebai, A" sort="Rebai, A" uniqKey="Rebai A" first="A" last="Rebaï">A. Rebaï</name></country><country name="France"><region name="Nouvelle-Aquitaine"><name sortKey="Lauvergeat, V" sort="Lauvergeat, V" uniqKey="Lauvergeat V" first="V" last="Lauvergeat">V. Lauvergeat</name></region></country></tree></affiliations></record>Pour manipuler ce document sous Unix (Dilib)
EXPLOR_STEP=$WICRI_ROOT/Wicri/Bois/explor/OrangerV1/Data/France/Analysis
HfdSelect -h $EXPLOR_STEP/biblio.hfd -nk 000003 | SxmlIndent | more
Ou
HfdSelect -h $EXPLOR_AREA/Data/France/Analysis/biblio.hfd -nk 000003 | SxmlIndent | more
Pour mettre un lien sur cette page dans le réseau Wicri
{{Explor lien
|wiki= Wicri/Bois
|area= OrangerV1
|flux= France
|étape= Analysis
|type= RBID
|clé= pubmed:27193354
|texte= The WRKY Transcription Factor Family in Citrus: Valuable and Useful Candidate Genes for Citrus Breeding.
}}
Pour générer des pages wiki
HfdIndexSelect -h $EXPLOR_AREA/Data/France/Analysis/RBID.i -Sk "pubmed:27193354" \
| HfdSelect -Kh $EXPLOR_AREA/Data/France/Analysis/biblio.hfd \
| NlmPubMed2Wicri -a OrangerV1
| This area was generated with Dilib version V0.6.25. |  |